PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_022395-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MYB | ||||||||
Protein Properties | Length: 215aa MW: 24685.8 Da PI: 9.3076 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.3e-16 | 12 | 59 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd ll+++++ +G g W+t++++ g+ R +k+c++rw +yl NNU_022395-RA 12 KGPWNPEEDRLLKKYIETHGEGKWATVSKRSGLMRGGKSCRLRWKNYL 59 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 54.1 | 3.6e-17 | 65 | 110 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +T+eE++l+++ +++lG++ W++Ia +++ gRt++++k++w+++l NNU_022395-RA 65 RGGMTEEEEDLIIRMHNLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 110 6789******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.045 | 7 | 59 | IPR017930 | Myb domain |
SMART | SM00717 | 2.9E-14 | 11 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.78E-29 | 11 | 106 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-14 | 12 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-23 | 13 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.96E-11 | 14 | 59 | No hit | No description |
PROSITE profile | PS51294 | 24.622 | 60 | 114 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-16 | 64 | 112 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-15 | 65 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 67 | 113 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.55E-12 | 68 | 110 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010026 | Biological Process | trichome differentiation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MEREGTKQVL KKGPWNPEED RLLKKYIETH GEGKWATVSK RSGLMRGGKS CRLRWKNYLR 60 PNIKRGGMTE EEEDLIIRMH NLLGNRWSLI AGRLPGRTDN EVKNYWNTHL IKKYPQCKKV 120 VSDSKRRKLS HSTNSQPICS SSPNSSTMKL DDQGGDKATT SSSNGVNRSA DNDVESQLSA 180 GQETVYEDDF LLQLEPNILF ESQFYFPEEF YPVLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-26 | 10 | 113 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activation factor positively regulating trichomes development (PubMed:24803498). Has a function nearly equivalent to that of GL1 and can complement gl1 mutants (PubMed:24803498). {ECO:0000269|PubMed:24803498}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin (IAA). {ECO:0000269|PubMed:9839469}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010241553.1 | 1e-160 | PREDICTED: transcription factor MYB82-like | ||||
Swissprot | Q9LTF7 | 2e-59 | MYB82_ARATH; Transcription factor MYB82 | ||||
TrEMBL | A0A1U7Z2S1 | 1e-159 | A0A1U7Z2S1_NELNU; transcription factor MYB82-like | ||||
STRING | XP_010241553.1 | 1e-159 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 3e-61 | myb domain protein 82 |