PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_022331-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MYB | ||||||||
Protein Properties | Length: 316aa MW: 35244.2 Da PI: 6.6221 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.1 | 1.3e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l +++k +G g W++ +++ g++R++k+c++rw++yl NNU_022331-RA 14 RGAWTALEDKILTNYIKVHGEGKWRSLPKKAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.4 | 2.5e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E++l+++++++lG++ W++Ia+ ++ gRt++++k++w++ NNU_022331-RA 67 RGNITPDEEDLIIRLHRLLGNR-WSLIAAXLP-GRTDNEIKNYWNT 110 7999******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.918 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.82E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-13 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.71E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.278 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.6E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-15 | 67 | 110 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-24 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.98E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MMKSACCSKE GLNRGAWTAL EDKILTNYIK VHGEGKWRSL PKKAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI TPDEEDLIIR LHRLLGNRWS LIAAXLPGRT DNEIKNYWNT SLGKKVKAGS 120 NSTLTPNNSN QSKQMKKKLI GSPPATEKES SIVRTKAVRC TKVYLRAQED QIEHINSVDF 180 ATTVAPTVGG DDHHMTHRTL EVVEPEFYNG LASFVSAEDN SSPNFMADLN EEELRLSDLL 240 GCDFSQLCGF DYGMVGEGSN GGDNDVFPSS SSGQRHCIPK EMLELENWTR SDGVQPAIVS 300 DIQSLASLIX DSEEDW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-25 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010241142.1 | 0.0 | PREDICTED: myb-related protein 308-like | ||||
TrEMBL | A0A1U7YMQ2 | 0.0 | A0A1U7YMQ2_NELNU; myb-related protein 308-like | ||||
STRING | XP_010241142.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 5e-59 | MYB family protein |