PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_022087-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | bHLH | ||||||||
Protein Properties | Length: 397aa MW: 45313.2 Da PI: 6.2441 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.3 | 1e-11 | 202 | 253 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r+ah ++Er+RR+++N+ ++ L++ +P++ ++ + a+i A +++k+L+ NNU_022087-RA 202 QRMAHIAVERNRRKQMNDHLSALKSFMPSS---FIQRGDQASIIGGAFDFVKELE 253 79***************************9...99***************99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.02E-10 | 200 | 257 | No hit | No description |
SuperFamily | SSF47459 | 6.94E-15 | 200 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.018 | 201 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.6E-13 | 202 | 267 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.1E-9 | 202 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-8 | 207 | 258 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MEELQEPINP CLLGVGEHLN AELLEQGVDA LHITCGPSSI SLENLRLEQE RQTLAMPRLE 60 LKMPFLQMLQ DVETPSFAES SFQLLLRLQQ QQRQKPWERN NWIEMESHVQ TLEQESCITY 120 DLSEAHSPVK SETKAPHHPQ SSSCLEVVVS SACNGEHNSP EKCRGGNSSC PRFTKPATAV 180 TRERRKRKRE KQSKNKEEVE NQRMAHIAVE RNRRKQMNDH LSALKSFMPS SFIQRGDQAS 240 IIGGAFDFVK ELEQLLQSLQ AQKRMKKSEE EDDDVNDKTG RRERESSLPW STHWEERGKS 300 KEELREENKS TVADIEVVVM EAHVNLKILS PRRPGQLLKT IAALEDLRLA ILHLSIHSSQ 360 GSVLYSFNLK MEDDCKLGSA DEIATAVHQV FNLINDH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 183 | 188 | RRKRKR |
2 | 184 | 190 | RKRKREK |
3 | 184 | 191 | RKRKREKQ |
4 | 202 | 213 | RMAHIAVERNRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010241047.1 | 0.0 | PREDICTED: transcription factor bHLH57 isoform X1 | ||||
TrEMBL | A0A1U7YTK4 | 0.0 | A0A1U7YTK4_NELNU; transcription factor bHLH57 isoform X1 | ||||
STRING | XP_010241047.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46810.1 | 7e-65 | bHLH family protein |