PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021835-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 140aa    MW: 15908.3 Da    PI: 10.8138
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021835-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.62.7e-162357135
           GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                   C +C t kTp+WR gp g+ktLCnaC + y++ +l
  NNU_021835-RA 23 CLHCATDKTPQWRTGPMGPKTLCNACRVPYKSGRL 57
                   99*****************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.3191753IPR000679Zinc finger, GATA-type
SMARTSM004017.5E-151767IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-151881No hitNo description
Gene3DG3DSA:3.30.50.104.0E-131855IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.34E-112269No hitNo description
PfamPF003203.1E-142357IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402348IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MKGTLKKRES SDGASGNSEG RKCLHCATDK TPQWRTGPMG PKTLCNACRV PYKSGRLVPE  60
YRPAESPTFV LTKHSNSHRK VLEFRRQKEL QRAQQQQFLH ANPIFDVSSG FKFFATELPS  120
KRKWGKKEKV DMVLNSNVSV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267189.11e-69PREDICTED: GATA transcription factor 12-like
SwissprotP697811e-45GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A1U8AW422e-68A0A1U8AW42_NELNU; GATA transcription factor
STRINGXP_010267189.14e-69(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.11e-41GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]