PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021829-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C3H
Protein Properties Length: 349aa    MW: 38325 Da    PI: 8.0455
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021829-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.46.6e-15275300126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    +ktelC+ +++tGtC+yG+ C+FaHg
  NNU_021829-RA 275 FKTELCNKWQETGTCPYGEHCQFAHG 300
                    79***********************8 PP
2zf-CCCH20.39.9e-07313337125
                    --S---SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                    ykte Cr  +++ tC+yG rC+F H
  NNU_021829-RA 313 YKTEVCRMVLAGETCPYGHRCHFRH 337
                    9**********66**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.2E-18269307IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-11271306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.76274302IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-9274301IPR000571Zinc finger, CCCH-type
PfamPF006426.7E-12275300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-12308341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-8308343IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.141312340IPR000571Zinc finger, CCCH-type
SMARTSM003562.2E-5312339IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MQNDTPYAAG GGSNIAVSPP PLSQQSQIKK PSPTPQKQSD GRSSLNSLYS IFSSETSLSN  60
SVSLSPSGCS CDGDTSNAIT TENRLYLVGL TLEYQQLVNR YGLCLKNLQE TANEVEALRQ  120
ENAKLRMANK DLTMRLSILT QASLQSLTQA SLQNLCNPSS LPSLSMIDEF RRLCVGDNLR  180
NSSVSGEISD SSPTSVIGSN QFESSTNRVS LPKSISVRSS GYLKMNQAGG SSGSSTRNNR  240
LRVASPVVSE TQRVYVPRGK EEDVLEFEVY NQGMFKTELC NKWQETGTCP YGEHCQFAHG  300
IGELRPVIRH PRYKTEVCRM VLAGETCPYG HRCHFRHALT EQEKLVGHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A5e-23275341470Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010279391.10.0PREDICTED: zinc finger CCCH domain-containing protein 15
SwissprotQ9C9F51e-72C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A1U8BPG30.0A0A1U8BPG3_NELNU; zinc finger CCCH domain-containing protein 15
STRINGXP_010279391.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.16e-74C3H family protein