PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021774-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 464aa    MW: 53001.3 Da    PI: 7.1646
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021774-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.13.7e-141171981298
                    HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
             B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                    +s+  ++p  f++++++  e+s  ++le ++   W vkl  +k+ ++  +l++GW++F  +  L+ g+f++Fk++g+  f   v++f 
  NNU_021774-RA 117 SSSKKRIPHAFVKHISE--ESSGRVILEGPNHGIWHVKL--NKTMNGiLFLEDGWEKFSTDSSLRLGEFLIFKYKGDIHF--SVRIFG 198
                    455678******77764..46679***************..999999999************************998777..788876 PP
2B348.21.9e-1526934716100
                    EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-SS CS
             B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrks 100
                    +++p  f+++ ++k  +s  +tle + g  W  kl  +++ +++++++GW++F +++ L + +f+vF+++g+  f   v++f+ks
  NNU_021774-RA 269 MRIPPAFVKHVSEK--SSERVTLECPGGDIWHAKL--SRRADGMFIEDGWEKFLRDQSLGDEEFLVFRYNGDLHF--SVTIFDKS 347
                    89******666544..6678***************..999999**************************987666..99999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.872106200IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.2E-17106202IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-11112200IPR003340B3 DNA binding domain
CDDcd100171.95E-12115197No hitNo description
PfamPF023624.2E-11117197IPR003340B3 DNA binding domain
SuperFamilySSF1019365.1E-17119202IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-22253349IPR015300DNA-binding pseudobarrel domain
CDDcd100172.54E-15254345No hitNo description
SuperFamilySSF1019361.9E-21254349IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.6E-13256347IPR003340B3 DNA binding domain
PfamPF023623.3E-13268346IPR003340B3 DNA binding domain
PROSITE profilePS5086312.28269347IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MKSDKIGSYF LFFPARIVIS LKGGQAQLSE QDKMVNLDGP DIDKKPREES GQIGSELRTE  60
VLVEPKTEVG MILEAFEIEQ IMGSSIFQST LTGELLGRWA VEAALSEKEQ AFDQLISSSK  120
KRIPHAFVKH ISEESSGRVI LEGPNHGIWH VKLNKTMNGI LFLEDGWEKF STDSSLRLGE  180
FLIFKYKGDI HFSVRIFGQS ACCKREDSFN VKSSQESPYV QGRRKRGKPP KSSKTEKQEQ  240
EMETLCPNCL DVKPEFFKVI IGDQIMLKMR IPPAFVKHVS EKSSERVTLE CPGGDIWHAK  300
LSRRADGMFI EDGWEKFLRD QSLGDEEFLV FRYNGDLHFS VTIFDKSACW REDSFEVNNP  360
SQVANHPGSN PSMSFETNKH GTAEKPRRNR FLGLQNPNQY DPLHSFQGTE GQRKSSPNSV  420
KHYEIARSKE WEAAFTFKKP YFIVEMKEHC VDKPFYVVSV LLTF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010279604.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A1U8BDS70.0A0A1U8BDS7_NELNU; B3 domain-containing transcription factor VRN1-like
STRINGXP_010279604.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.12e-14B3 family protein