PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_021763-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | bZIP | ||||||||
Protein Properties | Length: 274aa MW: 30131.8 Da PI: 6.4273 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 28 | 4.9e-09 | 87 | 133 | 4 | 50 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 + + rr NReA r++R++Kka+++ Lee+vk+L N++L+ +l+ NNU_021763-RA 87 VTKSRRPSGNREAVRKYREKKKAQTAYLEEEVKKLRLLNQQLIRKLQ 133 667889999**********************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.2E-7 | 84 | 151 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 5.4E-11 | 84 | 152 | No hit | No description |
CDD | cd14686 | 1.36E-10 | 89 | 133 | No hit | No description |
Pfam | PF07716 | 1.6E-12 | 89 | 133 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 5.63E-7 | 89 | 145 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 274 aa Download sequence Send to blast |
MNMDDGEVEV SDQVLLPDIY AAGDIQGSTS VDNFLDEFSK ITRTCTHTHT CNPPGHDAAH 60 THTCFHTHTQ VFASEEDDTP NHKQQSVTKS RRPSGNREAV RKYREKKKAQ TAYLEEEVKK 120 LRLLNQQLIR KLQGQAILET EVLRLKTLLI DLRGKIDNEL GVFPYQKQCN STTSFRKGDC 180 SIQSASGGIG LRCETDIPCL HPHIGPSLEA GIGGNTKMVV NWEGSCQPAV VNCQANLNAS 240 VTQNMANGEA HPNCLMPDTL DSLGTMVSSK SQAE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010279543.1 | 0.0 | PREDICTED: basic leucine zipper 23-like | ||||
Swissprot | Q8GTS2 | 4e-54 | BZP23_ARATH; Basic leucine zipper 23 | ||||
TrEMBL | A0A1U8BH57 | 0.0 | A0A1U8BH57_NELNU; basic leucine zipper 23-like | ||||
STRING | XP_010279543.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16770.1 | 7e-47 | bZIP family protein |
Publications ? help Back to Top | |||
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