PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_021624-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family LBD
Protein Properties Length: 214aa    MW: 24046.2 Da    PI: 9.3823
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_021624-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260108.84.2e-3413107194
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                    aCaaCk++r++C +dC+lap f  e++++f++vhk+FG+snv+k+l++l+ +e r +a++sl++eA  r++dP++G++g ++++ ++l++lk + 
  NNU_021624-RA  13 ACAACKHQRKRCGEDCILAPLFTPEKTQQFQAVHKVFGVSNVQKMLRKLDSHEsRVKAAESLIWEAVHRQKDPIHGCYGEYKRVVEELKSLKRQQ 107
                    7************************************************88888***********************************999765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.74412114IPR004883Lateral organ boundaries, LOB
PfamPF031958.6E-3313108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MQKSNSGASV HHACAACKHQ RKRCGEDCIL APLFTPEKTQ QFQAVHKVFG VSNVQKMLRK  60
LDSHESRVKA AESLIWEAVH RQKDPIHGCY GEYKRVVEEL KSLKRQQMAA MRRPESMIYK  120
PGPALVDWSN NNNANAMGVN NSNYIQSSGS LLFDAVPYSI QGQEKGSHGR DPLRSVVCSP  180
NPMNGFNQTY NYLPDQYGRM TLKTMDDTIW NGGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-221411012107LOB family transfactor Ramosa2.1
5ly0_B3e-221411012107LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00128DAPTransfer from AT1G06280Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010279241.11e-161PREDICTED: LOB domain-containing protein 2
SwissprotQ9LNB91e-36LBD2_ARATH; LOB domain-containing protein 2
TrEMBLA0A1U8BP351e-160A0A1U8BP35_NELNU; LOB domain-containing protein 2
STRINGXP_010279241.11e-161(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.12e-38LOB domain-containing protein 2