PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_021449-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Trihelix

Protein Properties

Length: 306aa MW: 36517.9 Da PI: 9.4751

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_021449-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	82.3	6.4e-26	47	128	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W +qe+++ i++r e+e+++ +k++k+lWe v++km+erg++r+p qCk+kw+nl +ryk ++++ ++ ++cp+f++++ NNU_021449-RA 47 QWGHQETRDFIAIRAELERDFTVAKRNKTLWEIVAAKMKERGYRRTPDQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFEEIH 128 7************************************************************99999974....678***998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	8.99E-26	46	111	No hit	No description
Pfam	PF13837	2.4E-23	47	129	No hit	No description
PROSITE profile	PS50090	7.143	48	104	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MMMRDGDNET LGRMNMMSVM PLQLNRAAIS GEVSTPSMPM KEDRIPQWGH QETRDFIAIR 60 AELERDFTVA KRNKTLWEIV AAKMKERGYR RTPDQCKCKW KNLVNRYKGK ETSDPENGRQ 120 CPFFEEIHAV FIERAKNLQR LLHESEAVSA RQAKKKTKRL SGDQSSDGFS EDDDSDEDHS 180 EEERPSRSNR KRKSDRRTTT LDKSLPGSNS NTGSIQEMLK EFFQQQQRMD MQWREMVERR 240 AQERQMLEQE WRQSMAKLER ERMLLEQAWR EREEQRRMRE ESXAEKRDAL LTTLLNKLLH 300 ENHHHR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ebi_A	7e-13	44	118	3	77	DNA binding protein GT-1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010278875.1	0.0	PREDICTED: trihelix transcription factor GT-3b-like
TrEMBL	A0A1U8BN83	0.0	A0A1U8BN83_NELNU; trihelix transcription factor GT-3b-like
STRING	XP_010278875.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	4e-32	Trihelix family protein