PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_020883-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family Trihelix
Protein Properties Length: 318aa    MW: 35321.7 Da    PI: 8.6984
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_020883-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.48e-1845131186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf....erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W++  vl L++++++++   +r+klk+ +Wee++++++ rg+     ++p+qCk+k+e+++kry+++ + +++  s   s+++++ +++
  NNU_020883-RA  45 EWSEGGVLSLLDVYESKWLLRNRAKLKGSDWEEIARQVSGRGCgtksVKTPNQCKNKIESMKKRYRAESALNNSA-S--GSSWQFYARMD 131
                    5*************************************888886443469***********************95.4..446******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.4E-2143132No hitNo description
Gene3DG3DSA:1.10.10.606.1E-459107IPR009057Homeodomain-like
CDDcd001670.0011259106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEEDSQVRVS QSEFKPTECM QLVQNEAGVG DIATGRTPDK SKRDEWSEGG VLSLLDVYES  60
KWLLRNRAKL KGSDWEEIAR QVSGRGCGTK SVKTPNQCKN KIESMKKRYR AESALNNSAS  120
GSSWQFYARM DGLLKGNYSS QSKGLDGCAN GAAELGPHAL PKVEMDDSQH VLKRVNEAGA  180
AHPQVIGKTQ NCEIVDVEAD GHMQDSNQDD GSNTVPDNRK ESRGTDSDLS TPRSKTADGT  240
AKVNSLKRRK SLITDVAESI RLLAHSILKI EQARMEMYKD TERLRAEAEI KRSEMELKRT  300
EIIAKTQLQI AKLLARRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278038.10.0PREDICTED: trihelix transcription factor ASIL2-like isoform X3
TrEMBLA0A1U8BL850.0A0A1U8BL85_NELNU; trihelix transcription factor ASIL2-like isoform X3
STRINGXP_010278037.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.14e-63sequence-specific DNA binding transcription factors