PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_020650-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ARF
Protein Properties Length: 368aa    MW: 40806.6 Da    PI: 7.5329
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_020650-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B382.15.3e-26121222199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f k+ltpsd+++ g +++p+ +a+++        +++ +  t++++d +g +We+++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+  ++++
  NNU_020650-RA 121 FAKILTPSDANNGGGFSVPRFCADSIfpaldykAEPPVQ--TISVKDVHGVVWEFRHIYRGTPRRHLLTTGWSKFVNHKKLVAGDSVVFM--KNQS 212
                    89*********************999****985444444..9************************************************..7799 PP

                    E..EEEEE-S CS
             B3  90 felvvkvfrk 99 
                    +el v+++r+
  NNU_020650-RA 213 GELSVGIRRT 222
                    99*****996 PP
2Auxin_resp91.81.1e-30274357183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                    aa+ a  + +Fev+Y+Pr+++++Fvvk+e ve++l++ +++GmR+kma+etedss+ ++ +Gtv+++ + d   W++S Wr+L+
  NNU_020650-RA 274 AAELAGANRPFEVIYYPRTGSPDFVVKAEVVEESLNIFWMIGMRVKMAVETEDSSRMTWfQGTVSSIATPDHGPWKGSFWRMLQ 357
                    677888999*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-37115230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.97E-30115230IPR015300DNA-binding pseudobarrel domain
CDDcd100175.20E-22120221No hitNo description
PfamPF023628.5E-24121222IPR003340B3 DNA binding domain
SMARTSM010191.4E-20121223IPR003340B3 DNA binding domain
PROSITE profilePS5086313.155121223IPR003340B3 DNA binding domain
PfamPF065076.3E-28274357IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MALQKVIELR NIDPHIWKAC AGSSVEIPVV GTKVYYFPQG HAEQASSAPN FSSLVCAKDM  60
VLCRIVSVMF LANPDTDEVF VRIRLEPLDR SLAGFIRKPP VAVGFSQDGG IDDTEEKVVS  120
FAKILTPSDA NNGGGFSVPR FCADSIFPAL DYKAEPPVQT ISVKDVHGVV WEFRHIYRGT  180
PRRHLLTTGW SKFVNHKKLV AGDSVVFMKN QSGELSVGIR RTARSNGSVD CIRWNYHVGA  240
AANSSTKLEE EFGCGEAFSR SSRGRVPAES VVEAAELAGA NRPFEVIYYP RTGSPDFVVK  300
AEVVEESLNI FWMIGMRVKM AVETEDSSRM TWFQGTVSSI ATPDHGPWKG SFWRMLQVNL  360
RFAFLFEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-641235851368Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010277676.10.0PREDICTED: auxin response factor 17-like
SwissprotQ84WU61e-120ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A1U8BKE40.0A0A1U8BKE4_NELNU; Auxin response factor
STRINGXP_010277676.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-122auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]