PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_020401-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family LBD
Protein Properties Length: 203aa    MW: 22005.3 Da    PI: 7.2846
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_020401-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.81.2e-40151161101
         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                    +C aCk+lrrkC+k+C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA ar+rdPvyG+vg+i++lqqq+ +l+aela
  NNU_020401-RA  15 PCGACKFLRRKCVKGCIFAPYFDSEQgASHFAAVHKVFGASNVSKLLLRIPVDKRLDAVVTICYEALARIRDPVYGCVGHIFALQQQVVNLQAELA 110
                    7***********************9989******************************************************************** PP

         DUF260  96 llkeel 101
                    +++++l
  NNU_020401-RA 111 YIQAQL 116
                    *99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.4814116IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-3915113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MSGISCNGGG GGGGPCGACK FLRRKCVKGC IFAPYFDSEQ GASHFAAVHK VFGASNVSKL  60
LLRIPVDKRL DAVVTICYEA LARIRDPVYG CVGHIFALQQ QVVNLQAELA YIQAQLTNME  120
IPLQPLSPTQ SSPSASLGAT SDLLPITNES MFFDPLQLQQ IVEMTGCWNQ TDQHTKNGDL  180
SALAWEFVSR YMPGVRFRPS DSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-38111167111LOB family transfactor Ramosa2.1
5ly0_B2e-38111167111LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010277396.11e-151PREDICTED: LOB domain-containing protein 19-like
SwissprotO813223e-66LBD31_ARATH; LOB domain-containing protein 31
TrEMBLA0A1U8BKK91e-150A0A1U8BKK9_NELNU; LOB domain-containing protein 19-like
STRINGXP_010277396.11e-151(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00210.12e-64LOB domain-containing protein 31