PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_020244-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

NAC

Protein Properties

Length: 311aa MW: 35028.7 Da PI: 8.6454

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_020244-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181	3e-56	10	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lppGfrFhPtdeel+++yL++k+++ +++ ++i++vd++k+ePw+Lp k+k +ekewyfFs rd+ky+tg r+nrat++gyWk+tgkdke++++ NNU_020244-RA 10 LPPGFRFHPTDEELITYYLTHKISDANFTG-RAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEIFNSv 104 79***********************999.89***********99999************************************998 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++elvg+kktLvfy+grap+gekt+Wvmheyrl NNU_020244-RA 105 SSELVGMKKTLVFYRGRAPRGEKTNWVMHEYRL 137 9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.45E-64	6	158	IPR003441	NAC domain
PROSITE profile	PS51005	60.971	10	158	IPR003441	NAC domain
Pfam	PF02365	4.7E-29	11	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MDGVAKEESL PPGFRFHPTD EELITYYLTH KISDANFTGR AITDVDLNKC EPWELPGKAK 60 MGEKEWYFFS LRDRKYPTGV RTNRATNAGY WKTTGKDKEI FNSVSSELVG MKKTLVFYRG 120 RAPRGEKTNW VMHEYRLHSK TIFRTAKDEW VVCRVFQKSA GGKKYPPNQP RANPYNLEIG 180 QGGMAPVVPA DTYHFPVGRN YVGNADIEEI SRVLRGAPNG NIQVQSQLNY PGAFTISGLN 240 LNLGASTQPV WRAMPPVLNQ QSVAMDASSS MLTNCMLPSD AGYNIDMNAA ANNRFQHMDP 300 CVELENCWPP Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-56	9	164	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-56	9	164	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-56	9	164	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-56	9	164	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-56	9	164	19	174	NAC domain-containing protein 19
3swm_B	2e-56	9	164	19	174	NAC domain-containing protein 19
3swm_C	2e-56	9	164	19	174	NAC domain-containing protein 19
3swm_D	2e-56	9	164	19	174	NAC domain-containing protein 19
3swp_A	2e-56	9	164	19	174	NAC domain-containing protein 19
3swp_B	2e-56	9	164	19	174	NAC domain-containing protein 19
3swp_C	2e-56	9	164	19	174	NAC domain-containing protein 19
3swp_D	2e-56	9	164	19	174	NAC domain-containing protein 19
4dul_A	2e-56	9	164	16	171	NAC domain-containing protein 19
4dul_B	2e-56	9	164	16	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00277	DAP	Transfer from AT2G24430	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010277182.1	0.0	PREDICTED: NAC domain-containing protein 100-like
Swissprot	Q9FLJ2	9e-83	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1U8B7Z3	0.0	A0A1U8B7Z3_NELNU; NAC domain-containing protein 100-like
STRING	XP_010277182.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	1e-106	NAC domain containing protein 38

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]