PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_020179-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Trihelix

Protein Properties

Length: 303aa MW: 35800.4 Da PI: 8.468

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_020179-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.1	1.8e-26	48	129	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W +qe+++ i++r e+e+++ +k++k+lWe v++km+erg++rsp qCk+kw+nl +ryk ++++ ++ ++cp+f++l+ NNU_020179-RA 48 QWGHQETRDFIAIRAELERDFTVAKRNKTLWEIVAAKMKERGYRRSPDQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFEELH 129 7************************************************************99999974....678****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.062	41	105	IPR017877	Myb-like domain
CDD	cd12203	1.52E-25	47	112	No hit	No description
Pfam	PF13837	1.2E-23	48	130	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MLMGGGDNET LSRMTMMSAM PLQLNPATIS GEIPTSSVSA KKDDRIPQWG HQETRDFIAI 60 RAELERDFTV AKRNKTLWEI VAAKMKERGY RRSPDQCKCK WKNLVNRYKG KETSDPENGR 120 QCPFFEELHA VFTERAKNMQ RLLLESEASA AGQAKKKVKR PSGDRSSEDL SDDDNEDDDD 180 SEEERLPKST RKRKAEKRAL DKSSSRTGIN SSSIQEMLQE FFVQQQRMEM QWREMMERRA 240 QERQMFEREW RQSMEKLERE RMLLEQAWKE REEQRRMREE SRAEKRDALL TSLLNKLLQE 300 DHL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ebi_A	2e-13	45	119	3	77	DNA binding protein GT-1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010276957.1	0.0	PREDICTED: trihelix transcription factor GT-3b-like
TrEMBL	A0A1U8BJK8	0.0	A0A1U8BJK8_NELNU; trihelix transcription factor GT-3b-like
STRING	XP_010276957.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	1e-31	Trihelix family protein