PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_020075-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bZIP
Protein Properties Length: 419aa    MW: 44732.4 Da    PI: 6.4524
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_020075-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_170.72.2e-22314376163
                    XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                    e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL+++v++L++eN +L++e+ +++ e+++l s +
  NNU_020075-RA 314 ERELKRQRRKQSNRESARRSRLRKQAECEELAQRVEVLTEENATLRSEVTRIRSEYEELLSRN 376
                    89*********************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.4E-34196IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165965.6E-48135276No hitNo description
Gene3DG3DSA:1.20.5.1705.8E-19307372No hitNo description
PfamPF001704.9E-21314376IPR004827Basic-leucine zipper domain
SMARTSM003383.3E-21314378IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.369316379IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.19E-11317373No hitNo description
CDDcd147024.11E-24319369No hitNo description
PROSITE patternPS000360321336IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MGSNEMESSS KVVKTPTTQG QPSATSTAAV YPDWAGFQAY SPIPPHGFFH SSVASSPQAH  60
PYMWGAQHLM PPYGTAPPPY VAMYPHGGLY AHASIPLGSH PFGPFAMPTP NGNIDATGTV  120
HGGTEADGNS SDGKERSPLK RSKESLGSLN MLTGKNNEMG KTQGASANGV LSQSAESAGE  180
GSSEGSDTNS QNDSQQKASG QDSVEGRDEV LFHCEASQNG NAVNTPVNGV PRPLPNAMLN  240
QAVVIMPMPT AGAPGGVAGP TTNLNIGMDY WAAPSSIPAL CGKVPSAPVA GGIVPTGVVG  300
SREGVQSELW IQDERELKRQ RRKQSNRESA RRSRLRKQAE CEELAQRVEV LTEENATLRS  360
EVTRIRSEYE ELLSRNASMK ERFGEIPRRH EDSRTGRTDK HSSVEHQQEV QTELVQSGH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1330336RRSRLRK
2330337RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010276801.10.0PREDICTED: bZIP transcription factor 16-like
SwissprotQ501B21e-140BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A1U8B6Z50.0A0A1U8B6Z5_NELNU; bZIP transcription factor 16-like
STRINGXP_010276801.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-129basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]