PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_020033-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Trihelix

Protein Properties

Length: 309aa MW: 34940.7 Da PI: 10.3784

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_020033-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.9	9.5e-17	43	126	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L++a+++++ r +r+klk+++We+v++++ +++ ++++qCk+k+e+++kry+ + +++ s++p+f++l+ NNU_020033-RA 43 EWSEGAVSSLLDAYESKWVRRNRAKLKGQDWEDVARHVssrvNSTKTPKTQTQCKNKIESMKKRYRSESATADA------SSWPLFQRLD 126 5*******************************9999888899999*****************999996......47***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.8E-20	41	126	No hit	No description
SuperFamily	SSF101447	9.42E-6	148	157	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MEKQQPDQET PSLLPTNSIK EESLRKPPTV ASGGGGDRLK RDEWSEGAVS SLLDAYESKW 60 VRRNRAKLKG QDWEDVARHV SSRVNSTKTP KTQTQCKNKI ESMKKRYRSE SATADASSWP 120 LFQRLDLLLR GKTHPPPQSL MVLDQPPPPP PPPPPPPPRG VQQQGLHESN GVEQEAKEEG 180 NGPSLLNHES DKSPMEMDSS TPVSDDREKQ KLMSRKMKMK LKKKKKTRRR DEWEVAESVR 240 WLAEVVVRSE QARMDTMREL ERMRVEVEAK KGEMDLKRTE IIASTQLQIA KLLAGSGKGI 300 DSSPRIGRS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010276676.1	0.0	PREDICTED: trihelix transcription factor ASIL1
TrEMBL	A0A1U8B6N3	0.0	A0A1U8B6N3_NELNU; trihelix transcription factor ASIL1
STRING	XP_010276676.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	5e-90	sequence-specific DNA binding transcription factors