PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_019865-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family M-type_MADS
Protein Properties Length: 303aa    MW: 34598.8 Da    PI: 7.4981
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_019865-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.36.4e-161352544
                   SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
         SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                    +  r +tf kR++g+ KKA+E S+LCd++++vii+++++
  NNU_019865-RA 13 KEKDRLTTFRKRQKGLKKKAFEFSTLCDVDACVIILGPKQ 52
                   667899*******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.9E-14162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.596151IPR002100Transcription factor, MADS-box
CDDcd002661.37E-24290No hitNo description
SuperFamilySSF554554.32E-19299IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-5323IPR002100Transcription factor, MADS-box
PfamPF003198.6E-161151IPR002100Transcription factor, MADS-box
PRINTSPR004042.1E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MGRRKLSMDL IAKEKDRLTT FRKRQKGLKK KAFEFSTLCD VDACVIILGP KQPGNVGPVT  60
PETWPEDPAE VRRIIERFKN LPKEERERHS LGLGDFLVGR KKKTLDELAQ LRQKNNNETQ  120
YPKFLDQLNN FYEEQLSQLC SDVDSKLAEV NTRIDWTKKQ KLQEEMAGMI EYYTNPSKNC  180
NPFPDLVYLP YEYHSWSGMM DDGVLNQQVL SHHPLPVGVF HANTMMTQMI AMNGSDDHSG  240
PTELCQYPLV CPLTVGPCNQ RVAGPSNTQP MMPSYFPYAV PGFVPMQMHH PSHCLLDGRV  300
ALL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1225RRKLSMDLIAKEKDRLTTFRKRQK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_010276309.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.13e-21AGAMOUS-like 82