PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_019810-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 339aa    MW: 37984 Da    PI: 6.7018
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_019810-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11e-17267301135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  NNU_019810-RA 267 CTHCLSQKTPQWRAGPLGPKTLCNACGVRFKSGRL 301
                    *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.227261297IPR000679Zinc finger, GATA-type
SMARTSM004018.9E-16261315IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.14E-14262324No hitNo description
Gene3DG3DSA:3.30.50.101.7E-13265299IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.67E-12266313No hitNo description
PfamPF003201.9E-15267301IPR000679Zinc finger, GATA-type
PROSITE patternPS003440267292IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
VVVGSGVSLR LIIQIILFYF KSFCRQKTRP YRESRGLCSS PFYLFHFLVS TSLTMDFCRN  60
VSVSAGLPSD LPSEQVISPA YPTLGALSTS LDDLFPCENT EDDVSLEWLS IFVEDCLSSN  120
GNCIPVPTST QGQESQTIRP LKPSKKNHGN PCLGEFFIPG KARSKRKRSR ATPLISWFQK  180
DPQNHLLHAA TSDPPLLHQA YWLADSELIL PKKEKSSRNE EEEEEEEEEE EEEEGEEKPE  240
EKMVGKDSRG SSGNLVEASV GQQPRRCTHC LSQKTPQWRA GPLGPKTLCN ACGVRFKSGR  300
LLPEYRPAKS PTFVSDKHSN SHKKIMEMRM AMLSSVSTE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010276403.10.0PREDICTED: GATA transcription factor 4-like
TrEMBLA0A1U8B6020.0A0A1U8B602_NELNU; GATA transcription factor 4-like
STRINGXP_010276403.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.12e-35GATA transcription factor 2