PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_019308-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bZIP
Protein Properties Length: 156aa    MW: 17701.7 Da    PI: 6.9732
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_019308-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.82.4e-133291463
                   XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1  4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                    ++++r+ +NRe+ArrsR RK++ ++ L   v++L +eN +    ++  ++++ + ++e+
  NNU_019308-RA 32 QRKQKRMLSNRESARRSRMRKQKHLDDLMAQVAQLRKENNQILTSINITTQHYLAIEAEN 91
                   579*************************************99999998888887776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-182993IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.5883194IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.1E-103178No hitNo description
SuperFamilySSF579598.75E-133385No hitNo description
PfamPF001702.1E-103378IPR004827Basic-leucine zipper domain
CDDcd147021.86E-183484No hitNo description
PROSITE patternPS0003603651IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MASSSGTSSG SSGSSTLQNS GSEEDLRLAM DQRKQKRMLS NRESARRSRM RKQKHLDDLM  60
AQVAQLRKEN NQILTSINIT TQHYLAIEAE NSILRAQMGE LNHRLQSLNE IIHYLSPNNS  120
AFETEDPQIN TESLVNPWNS MYLNQPIMAS ADIFQY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14552RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00239DAPTransfer from AT1G75390Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010275578.21e-111PREDICTED: bZIP transcription factor 11-like
SwissprotC0Z2L51e-53BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A1U8B3Z61e-110A0A1U8B3Z6_NELNU; bZIP transcription factor 11-like
STRINGXP_010275577.11e-111(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75390.11e-50basic leucine-zipper 44
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]