PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_018738-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

HD-ZIP

Protein Properties

Length: 338aa MW: 37570.1 Da PI: 6.0636

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_018738-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.3	1.3e-18	120	171	2	53
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 rk+ ++tkeq + Lee F++n++++ +++e LA++l+L rqV vWFqNrRa NNU_018738-RA 120 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEALASQLKLRPRQVEVWFQNRRA 171 78889**********************************************9 PP
2	HD-ZIP_I/II	88.4	9.1e-29	120	200	1	81
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 +kk+rl+keq++lLEesF+++++L+p++K++la++L+l+prqv+vWFqnrRA + ++++y++++ d+ +++ + ++ NNU_018738-RA 120 RKKLRLTKEQSRLLEESFRQNHTLNPKQKEALASQLKLRPRQVEVWFQNRRASISVSTTNRNYNRIRFYSDEAEADGDGMR 200 69*****************************************************************99999988877665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-19	103	170	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.41E-18	109	171	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.05	116	176	IPR001356	Homeobox domain
SMART	SM00389	1.1E-14	118	180	IPR001356	Homeobox domain
CDD	cd00086	2.34E-16	119	171	No hit	No description
Pfam	PF00046	5.9E-16	120	171	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
LFLPFQPFGL QYSLLNSLGL SISIVFSPFS SATLMADLPT CLELTISVPG LSSSPSPPLS 60 EKNTYIIIII IFFFVWFDDT ESGNAMRDLD INQIPSGIEE VGSAEDEEES GCGGGGGPPR 120 KKLRLTKEQS RLLEESFRQN HTLNPKQKEA LASQLKLRPR QVEVWFQNRR ASISVSTTNR 180 NYNRIRFYSD EAEADGDGMR VSEEVVRVTD GGEQEATEGG GRAEGDEGRT TDGDVSTQLR 240 APPGIDIDHV PQMRARDEQR PRQGSHHQHS ELRIHHNRPG LPQGTTDAPP PSTTVGGLLV 300 GQALVVVWWV HMYGQKSKMK RIKKIRKDIS HVREETSD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1U8B1R7	6e-43	A0A1U8B1R7_NELNU; LOW QUALITY PROTEIN: homeobox-leucine zipper protein HOX3
STRING	XP_010274666.1	3e-44	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	4e-26	homeobox-leucine zipper protein 17