PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_018734-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | GATA | ||||||||
Protein Properties | Length: 186aa MW: 21338.5 Da PI: 10.0775 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59 | 6.1e-19 | 93 | 127 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+t+kTplWR+gp g+k+LCnaCG+++rk+++ NNU_018734-RA 93 CVDCKTSKTPLWRSGPAGPKSLCNACGIRQRKRRR 127 ********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.9E-18 | 87 | 140 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.519 | 87 | 144 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 5.7E-13 | 89 | 128 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 8.1E-17 | 91 | 130 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.57E-10 | 92 | 120 | No hit | No description |
Pfam | PF00320 | 1.1E-16 | 93 | 127 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 93 | 118 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MLSSAERSSS GWDPHHHNHT YCYYDDQPHR DHDDDQQYDH HLQLPVQELK LGLYRKRPRK 60 IPARKDEEGG EMAKVVRGKK HATEGQMVIS RVCVDCKTSK TPLWRSGPAG PKSLCNACGI 120 RQRKRRRREL NILKMAGGVT MEKRQSKVEG KRTTLHMLQR RKFEGKEEAE AALLLMALSC 180 GVCVHS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 121 | 127 | QRKRRRR |
2 | 122 | 126 | RKRRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010274656.1 | 1e-137 | PREDICTED: GATA transcription factor 20-like | ||||
TrEMBL | A0A1U8BDE0 | 1e-136 | A0A1U8BDE0_NELNU; GATA transcription factor 20-like | ||||
STRING | XP_010274656.1 | 1e-137 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26930.1 | 2e-17 | GATA transcription factor 23 |