PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_018298-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 432aa    MW: 47373.5 Da    PI: 5.8458
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_018298-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.1e-20256306256
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     y+GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+ kl+ge
  NNU_018298-RA 256 LYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAFAYDTAAYKLRGE 306
                    59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.79E-32255315No hitNo description
SuperFamilySSF541712.42E-23256314IPR016177DNA-binding domain
SMARTSM003803.9E-35256319IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-31256314IPR001471AP2/ERF domain
PROSITE profilePS5103223.472256313IPR001471AP2/ERF domain
PfamPF008473.1E-13257306IPR001471AP2/ERF domain
PRINTSPR003674.8E-11257268IPR001471AP2/ERF domain
PRINTSPR003674.8E-11279295IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MEDQFSKIGS YLQKELPSYL QGISTETQLF FSPIMCDALA VIACREGXDD GAGGTSSSSS  60
NQIFSSPESS SSVDETTATT LDGNVAEFAT HQSSLFSCVS SAANCVSPNG FPEVXARFTP  120
LNFIESIPQL SQTQASPVPS PSSSSPPASN LLNLNLFLQE PTIQTTQTNQ TLDKDQRCDP  180
MLSSLNQFFP AFQHHQIQIQ PEHDCLRINH KLENIASKSG GDCWLGATKT QSMKQTGRRV  240
QDHHRQKALP SSPGKLYRGV RQRHWGKWVA EIRLPRNRTR VWLGTFDTAE EAAFAYDTAA  300
YKLRGEYAYL NFPDLKHQLK ISSLSGSTAA LLEAKLQAFC DGFQPSMKPT DTPSPPSSTT  360
LISENTSTLC SLEQKPSRKD GNSFDLQKRG VSEVVESKKA QGLPSDVDAV PLSRMPSLDM  420
DMIWDALPVS DL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-22252313163ATERF1
3gcc_A5e-22252313163ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010274030.10.0PREDICTED: ethylene-responsive transcription factor ERF062-like
TrEMBLA0A1U8B3X70.0A0A1U8B3X7_NELNU; ethylene-responsive transcription factor ERF062-like
STRINGXP_010274030.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.13e-47ERF family protein