PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_018270-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | WRKY | ||||||||
Protein Properties | Length: 204aa MW: 23165.3 Da PI: 8.9625 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.2 | 4.7e-30 | 142 | 200 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg++W+KYG+K+vk++++pr+Y+rC+ +gCpvkk++er+a+dp+ v++tYeg+Hnhe NNU_018270-RA 142 LDDGFKWKKYGKKMVKNKPYPRNYFRCSVEGCPVKKRIERDADDPRHVITTYEGTHNHE 200 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.6E-32 | 130 | 202 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.18E-27 | 136 | 202 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.481 | 137 | 202 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-32 | 142 | 201 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.6E-24 | 143 | 200 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MNIAQNLSID IEMSNRHPTP AGISPEKISH HLLNFELPDY LDLNQWFEGD TASVTHGSSN 60 QDLILPMPNI VGSGKNGSQA EVSSPSNMQC YFLLCAALEF SFFSVSIKTG ICFHVVRGRR 120 SRTRNSVLAR VAFRIKTEKD ILDDGFKWKK YGKKMVKNKP YPRNYFRCSV EGCPVKKRIE 180 RDADDPRHVI TTYEGTHNHE SPFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-26 | 132 | 202 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-26 | 132 | 202 | 7 | 77 | Probable WRKY transcription factor 4 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00531 | DAP | Transfer from AT5G26170 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | XP_010273969.1 | 1e-123 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 9e-42 | WRKY DNA-binding protein 50 |