PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_018241-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MYB | ||||||||
Protein Properties | Length: 306aa MW: 34162.9 Da PI: 9.3457 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.1 | 3e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l+ ++k +G g W++ +++ g++R++k+c++rw++yl NNU_018241-RA 14 RGAWTALEDKILIAYIKAHGEGKWRSLPKRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.3 | 1.3e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E+el+++++++lG++ W++Ia +++ gRt++++k++w++ NNU_018241-RA 67 RGNISEDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 7899******************.*********.************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.305 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.36E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.6E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.35E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.208 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-24 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.8E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.4E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.85E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MGRSPCCSKE GLNRGAWTAL EDKILIAYIK AHGEGKWRSL PKRAGLKRCG KSCRLRWLNY 60 LRPDIKRGNI SEDEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKKAQAKS 120 CLSPSNPNQR RTISTKPKEK PTPVRPPPGP LRTKPHVIRT KAMKCTKVLM PPPSQAAAAF 180 SSSLQNNQVK DSMPMIPLIH PHQTHSVTAP HQDNLNLTTN TTDGSGDFCA PYSHHHESDF 240 LRDLQVGHNL NLTRDNNTLS GTSDCSLLLL DEPMLPEELN ANGCLQQNFA MDLGSIASFL 300 DTDEWP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-25 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010273928.1 | 0.0 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | A0A1U8AZU7 | 0.0 | A0A1U8AZU7_NELNU; myb-related protein Myb4-like | ||||
STRING | XP_010273928.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 2e-62 | myb domain protein 3 |