PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_017269-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family Trihelix
Protein Properties Length: 326aa    MW: 36655.1 Da    PI: 8.0009
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_017269-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix58.91.3e-1822106276
       trihelix   2 WtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsess 76 
                    Wt +e+l+Li a++ +eer  ++           ++ +W++v ++++++g+ rs++qC++kw+nl ++ykk+++ e++  +s++ 
  NNU_017269-RA  22 WTVHETLVLISAKKMDEERRMKRGgdsgegrsrPAELRWKWVEDYCWRHGCLRSQNQCNDKWDNLMRDYKKVRDYERRLaESGDG 106
                    *************9777766642113334444499******************************************98334444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.621487IPR017877Myb-like domain
PfamPF138371.9E-132198No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MHSVMADQGA SNVLREYRKG NWTVHETLVL ISAKKMDEER RMKRGGDSGE GRSRPAELRW  60
KWVEDYCWRH GCLRSQNQCN DKWDNLMRDY KKVRDYERRL AESGDGEENS YWKLEKHDRK  120
ERNLPSNMVM EIYDALVEVV EKRGVQRVSA GSASNTSALA VDKAMASVQP SLPPLLQYHS  180
SDPTPTPTLP LPPAPPPPPP PTLPQSQPLP TLDVDSSDSD TSEHSQSQAK RRRRGEGTSS  240
ASNNSHEVGS AISKSASIIA EALQACEEKE ERRHRDLLTM QERRLKIEES RIEINREAIN  300
GLVDAINKLS SSILALVSNR TPAAPK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010272294.10.0PREDICTED: trihelix transcription factor ASR3-like isoform X1
TrEMBLA0A1U8AVW30.0A0A1U8AVW3_NELNU; trihelix transcription factor ASR3-like isoform X1
STRINGXP_010272294.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.12e-74Trihelix family protein