PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | NNU_017150-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 25672.2 Da PI: 7.4719 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.1e-20 | 28 | 77 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAa+a++aa+++++g NNU_017150-RA 28 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRG 77 69*******.**********8...557************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.1E-32 | 28 | 85 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.90E-18 | 28 | 85 | No hit | No description |
SMART | SM00380 | 1.1E-40 | 28 | 91 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-22 | 28 | 86 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.933 | 28 | 85 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.8E-14 | 28 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-11 | 29 | 40 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.0E-11 | 51 | 67 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MAPRDKPNGN GGGKGGNAGC NSNGKEVHFR GVRKRPWGRY AAEIRDPGKK SRVWLGTFDT 60 AEEAARAYDA AAREFRGSKA KTNFPLPSES NNNQSPSQSS TVESSSREGF SPAPVAAPSS 120 LEIDLLHRGA GGGGVGGGTA GFAVRFPFHH QHHVSPTAAA GVLPTAHPFF FFDAIVRSEN 180 MTHHHPLRFD PAAAEYQAAF AGGGVQSDSD SSSVVDFNHH DELIPRRGVL ELDLNLPPPE 240 VA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-22 | 28 | 90 | 5 | 68 | ATERF1 |
3gcc_A | 8e-22 | 28 | 90 | 5 | 68 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Strongly and quickly induced by ethylene. {ECO:0000269|PubMed:10945353}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010272364.1 | 1e-177 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
Swissprot | Q9LW49 | 6e-56 | ERF4_NICSY; Ethylene-responsive transcription factor 4 | ||||
TrEMBL | A0A1U8AW22 | 1e-175 | A0A1U8AW22_NELNU; ethylene-responsive transcription factor 4-like | ||||
STRING | XP_010272364.1 | 1e-176 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G44210.1 | 2e-25 | erf domain protein 9 |