PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_016938-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 339aa    MW: 38872 Da    PI: 7.8497
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_016938-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.5e-06174193120
                    EEETTTTEEESSHHHHHHHH CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                    ++C++C+k+F+r  n++ H+
  NNU_016938-RA 174 FSCSICNKTFNRYNNMQMHM 193
                    89*****************9 PP
2zf-C2H212.70.0004258280123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C +C+k+F  + + ++H +++
  NNU_016938-RA 258 FMCRKCSKPFAVRGDWRTHEKNC 280
                    89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.5E-5165196No hitNo description
SMARTSM003550.059174196IPR015880Zinc finger, C2H2-like
PfamPF128749.4E-5174193No hitNo description
Gene3DG3DSA:3.30.160.608.8E-6174193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.346174201IPR007087Zinc finger, C2H2
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
SMARTSM00355230221253IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.94E-5244278No hitNo description
SMARTSM00355110258278IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MSMSYYADNT GFCFQTPTFI EWLKPSVSPL SSSSSSSFCT NTQQQAQPQF SIPMSCLQLP  60
IFYQQQQEED FFHQTSQCLP LLSRFAESKP LKEEEIEVQK DSVSIKDEKL EKITVALHIG  120
LPNIEDSDDD DEIKSLSCKE DKSMNKNLED CSINTDSRFW IPTPAQILIG PTQFSCSICN  180
KTFNRYNNMQ MHMWGHGAQY RKGPESLRGT QPTAMLRIPC YCCAHGCKNN INHPRAKPLK  240
DFRTLQTHYK RKHGVKPFMC RKCSKPFAVR GDWRTHEKNC GKLWFCSCGS DFKHKRSLKD  300
HIKSFGKGHS PYPPNENFEE EKECITGSSE DELGSGRQL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271690.10.0PREDICTED: zinc finger protein WIP3-like
SwissprotQ9SGD11e-114ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A1U8AUD40.0A0A1U8AUD4_NELNU; zinc finger protein WIP3-like
STRINGXP_010271690.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-111WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]