PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_016429-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

HSF

Protein Properties

Length: 385aa MW: 43529.1 Da PI: 4.5172

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_016429-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	108.4	5.3e-34	15	107	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 Fl+k y+++ed++++ ++sws+++ sfv++d++ f++++LpkyFkhsnf+SF+RQLn+YgF+k + ++ weF ++ F kg+++ll++i NNU_016429-RA 15 FLTKCYDMVEDPATDPIVSWSSSNYSFVIWDMTAFSRDLLPKYFKHSNFSSFMRQLNTYGFRKADPDR---------WEFVNDGFVKGQRHLLKNI 101 9*************************************************************9999.........*************** PP XXXXXX CS HSF_DNA-bind 98 krkkse 103 rkk++ NNU_016429-RA 102 SRKKHN 107 *976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	9.0E-36	6	99	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	8.8E-56	11	104	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.58E-32	12	104	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	4.4E-30	15	104	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-18	15	38	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-18	53	65	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.1E-18	66	78	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MEESASSKGP VLPPFLTKCY DMVEDPATDP IVSWSSSNYS FVIWDMTAFS RDLLPKYFKH 60 SNFSSFMRQL NTYGFRKADP DRWEFVNDGF VKGQRHLLKN ISRKKHNQCP VQQKESQQKI 120 PVGACVEVGK LSLQEAIESL KKDKTLLMQE LVKLKQHQQT SEDEVHCLRK RLEGMEKAQQ 180 QMLSFLAMAM QSPGFLEQLL QQNENSWFMA GTSKKRRLAT LEQVTEGAEN EAFDGQIVMY 240 QPPKNETSRP IVMTTSNTNV SPNLGSSPSE IEDIVKNVDS MALSMGEMSD SPENDASFVI 300 PDFLYDHLLE QFLLDSPLVE NLEEIELDAP EPMSTGIEMK SSLPDSQHGI SQSMDLQMEE 360 QGLLASEANN RYEILYNNSG DLAAT

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MEESASSKGP VLPPFLTKCY DMVEDPATDP IVSWSSSNYS FVIWDMTAFS RDLLPKYFKH  60
SNFSSFMRQL NTYGFRKADP DRWEFVNDGF VKGQRHLLKN ISRKKHNQCP VQQKESQQKI  120
PVGACVEVGK LSLQEAIESL KKDKTLLMQE LVKLKQHQQT SEDEVHCLRK RLEGMEKAQQ  180
QMLSFLAMAM QSPGFLEQLL QQNENSWFMA GTSKKRRLAT LEQVTEGAEN EAFDGQIVMY  240
QPPKNETSRP IVMTTSNTNV SPNLGSSPSE IEDIVKNVDS MALSMGEMSD SPENDASFVI  300
PDFLYDHLLE QFLLDSPLVE NLEEIELDAP EPMSTGIEMK SSLPDSQHGI SQSMDLQMEE  360
QGLLASEANN RYEILYNNSG DLAAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-24	6	104	19	129	Heat shock factor protein 1
5d5v_B	2e-24	6	104	19	129	Heat shock factor protein 1
5d5v_D	2e-24	6	104	19	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010271233.1	0.0	PREDICTED: heat stress transcription factor A-1-like
Swissprot	Q84T61	1e-94	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A1U8AX34	0.0	A0A1U8AX34_NELNU; heat stress transcription factor A-1-like
STRING	XP_010271233.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17750.1	4e-89	heat shock factor 1

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]