PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_016399-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bZIP
Protein Properties Length: 224aa    MW: 24289.9 Da    PI: 7.4446
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_016399-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_176.73e-24121183163
                    XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                    e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL+ +v++L++eN++L++ele+l++e++kl se+
  NNU_016399-RA 121 ERELKRQRRKQSNRESARRSRLRKQAECEELAHRVETLKEENSTLREELERLREECEKLASEN 183
                    89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF165963.4E-111284No hitNo description
Gene3DG3DSA:1.20.5.1701.4E-19115180No hitNo description
SMARTSM003385.3E-23121185IPR004827Basic-leucine zipper domain
PfamPF001703.8E-22121183IPR004827Basic-leucine zipper domain
PROSITE profilePS5021714.035123186IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.5E-12124180No hitNo description
CDDcd147028.74E-18126164No hitNo description
PROSITE patternPS000360128143IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MKALALPTHQ GSHQKPSGEQ GSADAGTQNG STACSMSSRV TRTPPAQAML NQSMVMAMPP  60
AAVSGPTTNL NIGMDYWGAA APSSSATTRA KLPVIPASTA IVSSNQIGSR DGNPEAWLQD  120
ERELKRQRRK QSNRESARRS RLRKQAECEE LAHRVETLKE ENSTLREELE RLREECEKLA  180
SENASLTEKL KKYQGQESGA DDLNSNPDAE PLKASNTESI KSDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137143RRSRLRK
2137144RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271189.11e-153PREDICTED: bZIP transcription factor 16-like isoform X1
RefseqXP_010271190.11e-153PREDICTED: bZIP transcription factor 16-like isoform X1
RefseqXP_010271191.11e-153PREDICTED: bZIP transcription factor 16-like isoform X1
RefseqXP_010271192.11e-153PREDICTED: bZIP transcription factor 16-like isoform X1
RefseqXP_010271193.11e-153PREDICTED: bZIP transcription factor 16-like isoform X2
SwissprotQ501B24e-46BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A1U8AT521e-152A0A1U8AT52_NELNU; bZIP transcription factor 16-like isoform X2
TrEMBLA0A1U8ATJ61e-151A0A1U8ATJ6_NELNU; bZIP transcription factor 16-like isoform X1
STRINGXP_010271189.11e-152(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.14e-36basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]