PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_016374-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

G2-like

Protein Properties

Length: 338aa MW: 37473.9 Da PI: 8.9715

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_016374-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.5	7.3e-29	285	334	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ NNU_016374-RA 285 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 334 9************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.804	281	338	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-13	282	335	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.9E-25	283	334	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-21	285	336	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-6	286	337	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MFIEPSSVPT PDLSLHISPP NSAPSSICNG NSDQDTTGLD LWRRHDGLRS NSDSSVRPDS 60 QAYTELSLAN PRNGFEAESQ WRRSFTRGGA EEDELRHEQP TDHYSQHHHL RHPNSNRLNH 120 LNHAPSILDA SDGLRPIKGI PVYHNRSFPF IPMERSREKD GKMCFYQMSY PSWSSSLCSS 180 SSPSSVCSSS CPSSASPSSP FMAGGFDPMA ILHSGPNSPS PSSAYRIAAA ASRFNGLSSD 240 TLKPHQLHSL HHPHQYGIGP SDASHAMIRS RFMPKLPTKR NMRAPRMRWT STLHARFVHA 300 VELLGGHERA TPKSVLELMD VKDLTLAHVK SHLQVLLK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-14	286	334	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-14	286	334	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-14	286	334	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-14	286	334	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-14	286	334	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-14	286	334	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-14	286	334	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-14	286	334	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-14	286	334	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-14	286	334	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-14	286	334	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-14	286	334	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010271157.1	0.0	PREDICTED: transcription repressor KAN1
TrEMBL	A0A1U8ATH0	0.0	A0A1U8ATH0_NELNU; transcription repressor KAN1
STRING	XP_010271157.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16560.1	1e-38	G2-like family protein