PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_016298-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

Trihelix

Protein Properties

Length: 316aa MW: 35407.4 Da PI: 9.6742

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_016298-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	56.9	5.6e-18	57	153	2	86
trihelix 2 WtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 Wt +e+l+Li+a++ ++er +++ + +W++v ++++++g+ rs++qC++kw+nl ++ykk++e e + s+ s++ p + NNU_016298-RA 57 WTLHETLVLITAKKLDDERRIKASstppnppnpkhstkTVELRWKWVENYCWKHGCLRSQNQCNDKWDNLLRDYKKVREYEAR--SDGSKENPSYW 150 ***********96665555443366777777777667899**************************************8..57777888888 PP trihelix 84 qle 86 ++e NNU_016298-RA 151 KME 153 887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PRINTS	PR01217	3.9E-10	28	40	No hit	No description
PROSITE profile	PS50090	6.481	49	127	IPR017877	Myb-like domain
Pfam	PF13837	1.6E-12	56	153	No hit	No description
PRINTS	PR01217	3.9E-10	80	92	No hit	No description
PRINTS	PR01217	3.9E-10	189	206	No hit	No description
PRINTS	PR01217	3.9E-10	210	235	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MSEPPKASAV ILVDHHPYHH PAPAQPPLPP LITPGTTTTP SSASPSPLVR EYRKGNWTLH 60 ETLVLITAKK LDDERRIKAS STPPNPPNPK HSTKTVELRW KWVENYCWKH GCLRSQNQCN 120 DKWDNLLRDY KKVREYEARS DGSKENPSYW KMEKHERKER NLPSNLLPEV FEALNEVVHR 180 RYPPKTAPQP LPPSATAPAP APAPAPALPP PPPPIIVHPP PPPPPPPPPP PPPEPTVHSL 240 GSSIVRSASV LARTLLACEE KKEKRHQDVI EIEERRLRIE ENRNEVNRQG ISSLIAAVSN 300 LSGVIQSFVS DRRDVT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010270770.1	1e-145	PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 2
Refseq	XP_019054915.1	1e-145	PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 2
Refseq	XP_019054916.1	1e-145	PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 2
TrEMBL	A0A1U8B4R7	1e-144	A0A1U8B4R7_NELNU; pollen-specific leucine-rich repeat extensin-like protein 2
STRING	XP_010270770.1	1e-144	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	1e-52	Trihelix family protein