PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_016287-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C2H2

Protein Properties

Length: 556aa MW: 59593.9 Da PI: 8.2885

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_016287-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.3	2.8e-05	21	43	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H NNU_016287-RA 21 FICEVCNKGFQREQNLQLHRRGH 43 89*******************88 PP
2	zf-C2H2	12.6	0.00042	97	119	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ NNU_016287-RA 97 WKCDKCSKRYAVQSDWKAHSKTC 119 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.1E-6	20	43	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.11E-7	20	43	No hit	No description
Pfam	PF12171	2.7E-5	21	43	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.0052	21	43	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.99	21	43	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	23	43	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.8E-4	85	118	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	3.11E-7	92	117	No hit	No description
SMART	SM00355	140	97	117	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence Send to blast
MDPDAEVIAL SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLR QKTTKEVKRR 60 VYLCPEPTCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG 120 TREYRCDCGT LFSRRDSFIT HRAFCDALAQ ESARIPTGLS TMGSHLYGSS SVGLGLSQVG 180 SQISSLQDQN HPSSDILRLG GAGGPQFDHL IPPSNPSSFR PAQPTPSSAF FLPGSNQDFH 240 EEQQSHHGLL QNKPFHGLMQ LPDLQNNPSN SSSATAANLF NLSFFSNSST TSNNTNNNNH 300 HLSSSGLLIP EQFNGTPGGE GSSLFSGSIM GDHMGSSVPS IYNSSVQNDT GIAQMSATAL 360 LQKAAQMGST TSGNGASLLR GFASSSSSGV KSDRSHMSAN FRGSFGGGGG GENMRSQLEN 420 ENNFQDLMNS LANGGSSIFG SGSGGVPGFG GNCTSGGHEQ EASFGGFNAN RISLDQHHHS 480 TNLCNMDESK LHQNLAVSIG GSDRLTRDFL GVGGMVRSMS GGIPQREQHH GLDISSLDSE 540 MKSATSNRPF GGGNLQ

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence Send to blast

MDPDAEVIAL SPKTLMATNR FICEVCNKGF QREQNLQLHR RGHNLPWKLR QKTTKEVKRR  60
VYLCPEPTCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG  120
TREYRCDCGT LFSRRDSFIT HRAFCDALAQ ESARIPTGLS TMGSHLYGSS SVGLGLSQVG  180
SQISSLQDQN HPSSDILRLG GAGGPQFDHL IPPSNPSSFR PAQPTPSSAF FLPGSNQDFH  240
EEQQSHHGLL QNKPFHGLMQ LPDLQNNPSN SSSATAANLF NLSFFSNSST TSNNTNNNNH  300
HLSSSGLLIP EQFNGTPGGE GSSLFSGSIM GDHMGSSVPS IYNSSVQNDT GIAQMSATAL  360
LQKAAQMGST TSGNGASLLR GFASSSSSGV KSDRSHMSAN FRGSFGGGGG GENMRSQLEN  420
ENNFQDLMNS LANGGSSIFG SGSGGVPGFG GNCTSGGHEQ EASFGGFNAN RISLDQHHHS  480
TNLCNMDESK LHQNLAVSIG GSDRLTRDFL GVGGMVRSMS GGIPQREQHH GLDISSLDSE  540
MKSATSNRPF GGGNLQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	4e-34	93	157	3	67	Zinc finger protein JACKDAW
5b3h_F	4e-34	93	157	3	67	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269\|PubMed:22898356, ECO:0000269\|PubMed:24821766}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00255	DAP	Transfer from AT2G02070	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010270755.1	0.0	PREDICTED: protein indeterminate-domain 5, chloroplastic-like
Refseq	XP_010270757.1	0.0	PREDICTED: protein indeterminate-domain 5, chloroplastic-like
Swissprot	Q9ZUL3	1e-129	IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBL	A0A1U8ASH8	0.0	A0A1U8ASH8_NELNU; protein indeterminate-domain 5, chloroplastic-like
STRING	XP_010270754.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	1e-109	indeterminate(ID)-domain 5

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]