PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_015961-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

NAC

Protein Properties

Length: 531aa MW: 58226.2 Da PI: 4.6247

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_015961-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104	2e-32	41	119	50	129
NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 ++k+++ ewyfF++rdkkya+g r+nrat+ gyWk+tgkd+++++ +++ vg+kktL+f++grap+g++tdWvmheyrle NNU_015961-RA 41 CLKSRDLEWYFFCPRDKKYANGPRTNRATEIGYWKTTGKDRAICH-NSQIVGMKKTLIFHTGRAPRGNRTDWVMHEYRLE 119 5667788************************************.999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	37.241	1	141	IPR003441	NAC domain
SuperFamily	SSF101941	4.32E-39	32	141	IPR003441	NAC domain
Pfam	PF02365	2.4E-15	46	118	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence Send to blast
MVRLTGRYSR LAPKFCVVRV VVLSTILVST LDLTDIEEKS CLKSRDLEWY FFCPRDKKYA 60 NGPRTNRATE IGYWKTTGKD RAICHNSQIV GMKKTLIFHT GRAPRGNRTD WVMHEYRLED 120 RDLVNAGISQ GAYVLCKIFQ KSGIGPKNGE QYGAPFKEED WDDDVVNEPF SAPTAEPGSS 180 SGLQADDLNA SIMPGSVCES SLEPIPCQAV PSINNVEHFL PESDDISSLL AMFGNEDDAL 240 FSADHDKNEN LQSYNVNEST HLEGNGIFNA LEDIITLEDL NRSHLPLSSS EAECPLDQSF 300 LELKDLEHPL AADPCVVNGA EQFPTVDPFI YYGNYDNLEG FCGSVLPLDV VLSTPGDNGV 360 GGNSAAYEAD ICDPTAPSEN AEDREKQYAT QALARGEQRA SSYSRLQCLL DNIPAHPASA 420 AEHPSPTSRE NRATSISLSS SYGGSSIHVK AKVTAGCACT KDTPSDKLGE FPCICCYGYN 480 LSRKEFREQA ANRGNGLTFV FFLGMVSALI WLSLFVVSVK LGKYVWGLIL S

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence Send to blast

MVRLTGRYSR LAPKFCVVRV VVLSTILVST LDLTDIEEKS CLKSRDLEWY FFCPRDKKYA  60
NGPRTNRATE IGYWKTTGKD RAICHNSQIV GMKKTLIFHT GRAPRGNRTD WVMHEYRLED  120
RDLVNAGISQ GAYVLCKIFQ KSGIGPKNGE QYGAPFKEED WDDDVVNEPF SAPTAEPGSS  180
SGLQADDLNA SIMPGSVCES SLEPIPCQAV PSINNVEHFL PESDDISSLL AMFGNEDDAL  240
FSADHDKNEN LQSYNVNEST HLEGNGIFNA LEDIITLEDL NRSHLPLSSS EAECPLDQSF  300
LELKDLEHPL AADPCVVNGA EQFPTVDPFI YYGNYDNLEG FCGSVLPLDV VLSTPGDNGV  360
GGNSAAYEAD ICDPTAPSEN AEDREKQYAT QALARGEQRA SSYSRLQCLL DNIPAHPASA  420
AEHPSPTSRE NRATSISLSS SYGGSSIHVK AKVTAGCACT KDTPSDKLGE FPCICCYGYN  480
LSRKEFREQA ANRGNGLTFV FFLGMVSALI WLSLFVVSVK LGKYVWGLIL S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-28	48	142	72	166	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-28	48	142	72	166	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-28	48	142	72	166	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-28	48	142	72	166	NO APICAL MERISTEM PROTEIN
4dul_A	1e-28	48	142	72	166	NAC domain-containing protein 19
4dul_B	1e-28	48	142	72	166	NAC domain-containing protein 19

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010270427.1	0.0	PREDICTED: NAC domain-containing protein 82-like isoform X1
TrEMBL	A0A1U8B342	0.0	A0A1U8B342_NELNU; NAC domain-containing protein 82-like isoform X1
STRING	XP_010270427.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04410.1	5e-62	NAC domain containing protein 2