PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_015932-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | MYB | ||||||||
Protein Properties | Length: 327aa MW: 37366.2 Da PI: 8.5559 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58 | 2.2e-18 | 17 | 62 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ NNU_015932-RA 17 RGHWRPAEDEKLRQLVEQYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 62 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 60.3 | 4.1e-19 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ NNU_015932-RA 69 RRPFTEEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 112 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.844 | 12 | 63 | IPR017930 | Myb domain |
SMART | SM00717 | 3.9E-15 | 16 | 65 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.24E-30 | 16 | 110 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.5E-17 | 17 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 18 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.61E-14 | 20 | 61 | No hit | No description |
PROSITE profile | PS51294 | 28.019 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-16 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-16 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-21 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.70E-8 | 80 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MEDSGSGASD DGKTCPRGHW RPAEDEKLRQ LVEQYGPQNW NSIAEKLQGR SGKSCRLRWF 60 NQLDPRINRR PFTEEEEERL LAAHRIHGNK WALIARLFPG RTDNAVKNHW HVIMARKHRE 120 RSKLYGKRGC QNFFLRNSSA SSHDYGKCSR PQIENQSKEF QFNRSEFLEF QSHGKDGVFE 180 VSPSSSPQTW VFSSSMNTTS TQSVDTFHGG GRDYFSSSCC IMGSSHTSDL QPRYSCYTNS 240 SLYSGCRNFS VPLLPNYKGF TYTQHGNPNQ SDHGYENNKM IKSTELERFG DNGLTPKFRM 300 TTDQEQGDDS KHKDVPFIDF LGVGISS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 5e-32 | 17 | 117 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 5e-32 | 17 | 117 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010270380.1 | 0.0 | PREDICTED: transcription factor MYB23 | ||||
TrEMBL | A0A1U8AR74 | 0.0 | A0A1U8AR74_NELNU; transcription factor MYB23 | ||||
STRING | XP_010270380.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17950.1 | 3e-65 | myb domain protein 52 |