PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_015884-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | GATA | ||||||||
Protein Properties | Length: 230aa MW: 25805.1 Da PI: 6.28 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 56.9 | 2.8e-18 | 165 | 200 | 1 | 36 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36 C++C + kTp+WR gp g+ktLCnaCG++y++ +l+ NNU_015884-RA 165 CTHCDAEKTPQWRMGPMGPKTLCNACGVRYKSGRLM 200 ********************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.3E-17 | 159 | 209 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.123 | 159 | 195 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.09E-14 | 161 | 222 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.3E-14 | 162 | 197 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.56E-12 | 164 | 212 | No hit | No description |
Pfam | PF00320 | 8.2E-16 | 165 | 200 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 165 | 190 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MAVCESYNAA DLLDFKLDDL EENLREIDTP FQAGFDDFPA GFDNFPEIFE GFTGSQLCVP 60 EDDVENLDWF PNFTEDSISL SDVLTASENS SISPTTPERE TENGKSYSSV DVCGLLRQTI 120 PSKRPRTKRV GGRVWSGNVM RFSLPESQVP AKAKRGKYNI MGRRCTHCDA EKTPQWRMGP 180 MGPKTLCNAC GVRYKSGRLM PEYRPAASPS FNSLLHSNSH KKIMKMRKGE |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010270320.1 | 1e-173 | PREDICTED: GATA transcription factor 9-like | ||||
TrEMBL | A0A1U8B2U5 | 1e-172 | A0A1U8B2U5_NELNU; GATA transcription factor 9-like | ||||
STRING | XP_010270320.1 | 1e-173 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36240.1 | 3e-43 | GATA transcription factor 7 |