PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_015711-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

ERF

Protein Properties

Length: 235aa MW: 25911.6 Da PI: 9.5768

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_015711-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.9	2.9e-19	32	80	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +gr++AeIrdp + ++r++lg+f++ae+Aa+a++aa+++l+g NNU_015711-RA 32 FRGVRKRP-WGRFAAEIRDPLK---KTRVWLGTFDSAEDAARAYDAAARNLRG 80 8*****.******743...5***********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.1E-12	31	80	IPR001471	AP2/ERF domain
SMART	SM00380	3.6E-39	31	94	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.433	31	88	IPR001471	AP2/ERF domain
CDD	cd00018	9.43E-19	31	90	No hit	No description
SuperFamily	SSF54171	4.58E-22	32	90	IPR016177	DNA-binding domain
PRINTS	PR00367	3.0E-10	32	43	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.9E-32	32	89	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.0E-10	54	70	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MRRGRGTTAA TAAAANIASG SGSRNLTKEI RFRGVRKRPW GRFAAEIRDP LKKTRVWLGT 60 FDSAEDAARA YDAAARNLRG PKAKTNFPLS STPSYPQHHH QHQHHYHHLG FQQSPNDPHY 120 NPQLHPHQHH QPQRPTSSSL SSTVESFSGP RLSSAGPVVQ SSVAPGRHRR QHHPPPPPVL 180 PDDCHSDCDS SSSVIDDGDI VSSSFRKPLP FDLNLPPLDE VDFAGDDFQS TVLCL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	1e-20	32	89	3	61	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	1e-20	32	89	6	64	ATERF1
3gcc_A	1e-20	32	89	6	64	ATERF1
5wx9_A	6e-20	22	88	4	72	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:11487705, ECO:0000269\|PubMed:9756931}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:12805630}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010270056.1	1e-172	PREDICTED: ethylene-responsive transcription factor 3-like
Swissprot	O80339	9e-50	ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBL	A0A1U8AQD8	1e-171	A0A1U8AQD8_NELNU; ethylene-responsive transcription factor 3-like
STRING	XP_010270056.1	1e-172	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20310.1	4e-27	ethylene response factor 7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]