PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_015653-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ARR-B
Protein Properties Length: 554aa    MW: 62357.6 Da    PI: 6.6171
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_015653-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.75.4e-28316370156
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                    k +++WtpeLH+rFv+a+e+L G ++A+P++ilelmkv+gLt+++v+SHLQkYR++
  NNU_015653-RA 316 KMKVDWTPELHKRFVQAIEHL-GVDQAIPSQILELMKVEGLTRHNVASHLQKYRMH 370
                    5689*****************.********************************96 PP
2Response_reg28.29.3e-11201261109
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                    vl+ d++ +     ++ le+ +y +v ++++ ++al+ l +k   +++ ++ ++  ++ G+  ++ +++++ +lp ++ +     +++ +++ +Ga
  NNU_015653-RA  20 VLLLDEDSISVAQTKSKLEEMHY-IVSTFSNESDALTELANKPenFHVAIVEVSVGKSYGS--FRFLETAK-DLPTVMTSNIHCLSTMMKCIALGA 111
                    7999999999*************.***************777666************9996..56666665.899999998888************ PP

                    SEEEESS--HHHHHH CS
   Response_reg  95 kdflsKpfdpeelvk 109
                     +fl Kp ++++l++
  NNU_015653-RA 112 AEFLQKPLSEDKLRN 126
                    ************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.85E-1316139IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.3E-1416140No hitNo description
PROSITE profilePS5011018.73319132IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.2E-720127IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.59E-621131No hitNo description
PROSITE profilePS5129414.903313372IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-27314373IPR009057Homeodomain-like
SuperFamilySSF466893.31E-18314373IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-25316370IPR006447Myb domain, plants
PfamPF002491.9E-7319368IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MVFTADDLLR WKDFPKGLRV LLLDEDSISV AQTKSKLEEM HYIVSTFSNE SDALTELANK  60
PENFHVAIVE VSVGKSYGSF RFLETAKDLP TVMTSNIHCL STMMKCIALG AAEFLQKPLS  120
EDKLRNIWQH VVHKAFNAGE NAVSKPLKPI RETVSSMIQL QLETTKVEQK NILEAENEIQ  180
VHKKGHEQSV ATDRFPAPST PQLKQGERLL DDGECHDQSN FLLEKEIEDQ GDPKFVETTC  240
NNTVVEITVK AEPSPRCEEG GIMEEDDSTD GSKTGNRISS PPQDKGSAED SRIDAGNSKK  300
ASLIPNSCRT NINKKKMKVD WTPELHKRFV QAIEHLGVDQ AIPSQILELM KVEGLTRHNV  360
ASHLQKYRMH RRHIIPREDD RRWQLPRDTT PRVYPQKPVM AFPPYHFGHG FSPSQHYPAW  420
GHPSSHPSSV QVWGHPSYPT WQSPESCPWK TYPGMHADAW GCPVMPMPQG PYSTFPQNSL  480
GFQSFEDKGN LLGNYIDLHP AEEVIDKVVK EAISKPWLPL PLGLKPPSTE SVLSELHRQG  540
ISCIPPYKNT NSSC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A6e-18321370655Transcription factor LUX
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269954.10.0PREDICTED: two-component response regulator-like APRR2 isoform X3
RefseqXP_019054847.10.0PREDICTED: two-component response regulator-like APRR2 isoform X3
TrEMBLA0A1U8AQL00.0A0A1U8AQL0_NELNU; two-component response regulator-like APRR2 isoform X3
STRINGXP_010269946.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-134ARR-B family protein