PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_013980-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 336aa    MW: 37024.9 Da    PI: 6.4219
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_013980-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.3e-18232266135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  NNU_013980-RA 232 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 266
                    99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.9E-8418319IPR016679Transcription factor, GATA, plant
SMARTSM004014.7E-18226276IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.558226262IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-15227290No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14227263IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.32E-14231278No hitNo description
PfamPF003201.2E-15232266IPR000679Zinc finger, GATA-type
PROSITE patternPS003440232257IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEAPEFFHGG YCRAGNPQFT PEKRLADSKS GDHFIIDDLL DFSNEDAVIT EGTFDTITGN  60
STDSSTVTVL DSCNSSFSGS DTQISGDLGC RNFPDAQFSG DLCVPYDDLA ELEWLSNFVE  120
ESFSSEDLQK LQLISGMKAR TDDVSDTREF QPENNKNNSI FRPEMSVPAK ARSKRSRAAP  180
GNWSSRLLVL SPTTSSSESD VATSSGKKST KGTPKKRESS DGASGNGEGR KCLHCATDKT  240
PQWRTGPMGP KTLCNACGVR YKSGRLVPEY RPAASPTFVL TKHSNSHRKV LELRRQKELQ  300
RAQQQQFLHA NPIFDVSSGE DYLIHHHAGP DFRQLI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267189.10.0PREDICTED: GATA transcription factor 12-like
SwissprotP697811e-96GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A1U8AW420.0A0A1U8AW42_NELNU; GATA transcription factor
STRINGXP_010267189.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.14e-76GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]