PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_013920-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C3H
Protein Properties Length: 387aa    MW: 42775.1 Da    PI: 7.3686
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_013920-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH283.8e-09139159526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     C++f++ G Ck+Gd C FaHg
  NNU_013920-RA 139 ACPDFRK-GNCKRGDACEFAHG 159
                    7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.4E-6134160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.976135161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5139161IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-7139159IPR000571Zinc finger, CCCH-type
SMARTSM0035614169192IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.643169193IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MMIGEGNQQN PTVHVPPWTL FDDTSPGMKF PLPVSGISMN ANSNGIAAGD YCPFLLGESL  60
AALQCYLPSN DVDADSDLSG RESDMPINVH TCDEFRMYEF KVRRCARGRS HDWTECPFAH  120
PGEKARRRDP RKFHYSGTAC PDFRKGNCKR GDACEFAHGV FECWLHPARY RTQPCKDGTS  180
CRRRVCFFAH TPEQLRVLPQ QSPRTPVSPE SYDGSPLRQA LDSYFQKNTV ISSPTSTLMS  240
PPMSPPSDSP PMSPNSPSLS RLLGSNSIND VVTSMRQLQL SKVKSVPTSW SVQVGSGFVS  300
PRGSTLRPGF FSLPSTPTRT PTRCGLGYLD TWDGGSTVEE EPAMERVESG RDLRAKIYEK  360
LSKENSLDPV DSPSPTPDVG WVSELVK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010267090.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotO821991e-130C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A1U8AVU50.0A0A1U8AVU5_NELNU; zinc finger CCCH domain-containing protein 20-like
STRINGXP_010267090.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-115C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Swain S,Singh N,Nandi AK
    Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant.
    J. Biosci., 2015. 40(1): p. 137-46
    [PMID:25740148]
  3. Singh N,Swain S,Singh A,Nandi AK
    AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling.
    Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333
    [PMID:29327969]