PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_013586-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | Nin-like | ||||||||
Protein Properties | Length: 224aa MW: 25721.6 Da PI: 9.7541 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 79 | 5.2e-25 | 104 | 152 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +i+led++++F+ pi++AAke++v+lTvLK++CR++ IkRWPhRkiksl NNU_013586-RA 104 SIDLEDIKRHFKVPITKAAKEMKVGLTVLKKRCRELQIKRWPHRKIKSL 152 699********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.291 | 87 | 173 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 7.6E-22 | 105 | 152 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MELMMWWQWQ NQVQELEFKY ANDDIYSDFG SFEASFPCYH ENRDNTIRKV APLNAVIMDG 60 SDDSGGNGSC IEIPTGITGA MVESSSSSSS TQQQKRFGRS KSISIDLEDI KRHFKVPITK 120 AAKEMKVGLT VLKKRCRELQ IKRWPHRKIK SLSSLIHNVK NRECEKELGM TEEIQKLEEH 180 KREMEKLPQM ALTEKTKKLR QVCFKAKYKM RRSLAAAAAA VATD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019054410.1 | 1e-168 | PREDICTED: protein RKD4-like | ||||
Swissprot | Q9LVU8 | 2e-36 | RKD4_ARATH; Protein RKD4 | ||||
TrEMBL | A0A1U8Q8K1 | 1e-166 | A0A1U8Q8K1_NELNU; protein RKD4-like | ||||
STRING | XP_010266632.1 | 1e-148 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 2e-38 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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