PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_013509-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family WRKY
Protein Properties Length: 362aa    MW: 40549.3 Da    PI: 5.4803
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_013509-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.81.3e-29129189158
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                    ldDgy+WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+rs+edp+v++itY+g+H++
  NNU_013509-RA 129 LDDGYSWRKYGQKDILGAKYPRGYYRCTHRnlqGCLATKQVQRSDEDPSVFDITYRGKHTC 189
                    59***************************99999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.41124187IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.4E-29127190IPR003657WRKY domain
SuperFamilySSF1182906.41E-26128189IPR003657WRKY domain
SMARTSM007743.6E-42129191IPR003657WRKY domain
PfamPF031061.2E-27130189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MENAGEWDKN ALLNELIKGR EIALKLQVLD PSSPAEMREM LVQKALITFD RALSILKRNG  60
LETETQSTQI VAGGMVDSPR SDSASPRSDD SDRPFKDQDR RDISKKRKTL PRWTEQVRVG  120
PGIGLEGPLD DGYSWRKYGQ KDILGAKYPR GYYRCTHRNL QGCLATKQVQ RSDEDPSVFD  180
ITYRGKHTCI QASHLVPAST STEKPERKRN QDHLQPEQLP SQQNQSQEIL LNFRTGLKVQ  240
TNDLDSREMI SSSFSFPSTS FGCIKTENHI FSPSTLDNNF MGSYSPSFIS PATSESNCFS  300
MLPCRMNSLQ GGHNLQTSES DLTEIISAAT SATNSPIMDL DFSLDTVDFD TNFPFDTPGF  360
LL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-20129189868OsWRKY45
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276265e-42KT827626.1 Manihot esculenta WRKY transcription factor 51 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010266466.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A1U8AU800.0A0A1U8AU80_NELNU; probable WRKY transcription factor 41
STRINGXP_010266466.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.12e-54WRKY family protein