PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | NNU_012454-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 259aa MW: 30122.2 Da PI: 9.2508 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.2 | 4.4e-19 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+ll ++v+++G g+W+++ar g++R +k+c++rw +yl NNU_012454-RA 16 KGPWTAEEDKLLTEYVRLHGEGRWNSVARLAGLRRNGKSCRLRWVNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.5 | 2.3e-16 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg T+ E+ ++ ++++++G++ W+tIar ++ gRt++++k++w+++l NNU_012454-RA 69 RGQITPHEESIIMELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTHL 114 7888******************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.351 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.67E-30 | 13 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-16 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-17 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-23 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.35E-11 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.482 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 4.7E-14 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 69 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-24 | 71 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.60E-9 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 259 aa Download sequence Send to blast |
MAGKLGWGIL EEGWRKGPWT AEEDKLLTEY VRLHGEGRWN SVARLAGLRR NGKSCRLRWV 60 NYLRPDLKRG QITPHEESII MELHARWGNR WSTIARSLPG RTDNEIKNYW RTHLKKKSEA 120 SPEHSERSKA RLLRQQMQQK RQQFQLQQQQ QQQQLQKKNQ QNQVGMKKIM SLLDECDHRL 180 LPLVQEREDM VFMYPSTSEE QCLLSPVFNS DTSVPEASSS EEILWGGLWN LDDVQSNLDS 240 TCATSKACLP NMITPLPSN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-26 | 16 | 117 | 27 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010264825.1 | 0.0 | PREDICTED: transcription factor MYB59-like | ||||
TrEMBL | A0A1U8AD43 | 0.0 | A0A1U8AD43_NELNU; transcription factor MYB59-like | ||||
STRING | XP_010264825.1 | 0.0 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G24310.1 | 3e-77 | myb domain protein 305 |