PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012368-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 333aa    MW: 35926.2 Da    PI: 4.9565
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012368-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.21.9e-17239272134
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                    C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  NNU_012368-RA 239 CLHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 272
                    99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.3E-734324IPR016679Transcription factor, GATA, plant
SMARTSM004013.1E-16233283IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.306233269IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-14237270IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.05E-14237296No hitNo description
CDDcd002023.85E-14238285No hitNo description
PfamPF003204.1E-15239272IPR000679Zinc finger, GATA-type
PROSITE patternPS003440239264IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MIGPADDLLD ICGDFFDQID DLLDFPTGEM EGEVIGGDCN AFWTAPPPDT LMGGPNAVFS  60
GNNDSSRSEL ANELSVPYED IAQLEWLSNF VEDSFSAGSS ITIDKDSSTN DQNSYQFQTS  120
SPVSVLESSS SSSGSGGRTM PLSPETIVPG RARSKRPRPA TFNPRPVIPL ISPTSSVTDP  180
SPSFSASELA SEFENHAESR PWKKVPRSEM LGQKKKKLSP APGAKEQYAP AQPVAVRKCL  240
HCEITKTPQW RAGPMGPKTL CNACGVRYKS GRLFPEYRPA ASPTFVASLH SNSHKKVLEM  300
RTQAGQKAEM AATGTPITDA TELIPNSHLL DYI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154158KRPRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264666.10.0PREDICTED: GATA transcription factor 8-like
TrEMBLA0A1U8AB310.0A0A1U8AB31_NELNU; GATA transcription factor
STRINGXP_010264666.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.18e-41GATA transcription factor 9