PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012343-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family Trihelix
Protein Properties Length: 304aa    MW: 36019.9 Da    PI: 8.5917
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012343-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix781.4e-2463145186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W+ qe+++ + +r e+++++ ++k++k lWe vs k++e+g++rs+ qCk+kw+nl +ryk ++++e +     ++++p++++l+
  NNU_012343-RA  63 QWSLQETKEFLSIRAELDRTFMETKRNKLLWEVVSTKLKEKGYNRSADQCKCKWKNLVTRYKGCETIEPES---MRQQFPFYNELQ 145
                    7********************************************************************84...45689*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122035.66E-2362127No hitNo description
PfamPF138379.6E-2063147No hitNo description
PROSITE profilePS500907.35264120IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
LSLSLSRVRV LYLGTGRDDI SLFSLSPHIY SFSLLLRTLS PLCVMEGHHL ITVNVDTADR  60
FPQWSLQETK EFLSIRAELD RTFMETKRNK LLWEVVSTKL KEKGYNRSAD QCKCKWKNLV  120
TRYKGCETIE PESMRQQFPF YNELQAIFTA RMQRMLWQEA EGVVSSTNLK KKTGRLSSDD  180
DDDESYEDKD SGRKKKKSRS NNSTGTGSSS SANNNLQEIL EEFMRQQLQM EVQWREAVEA  240
REEQRRLKEM EWREAMEALE KERLLMDRRW REIEEQRRLR EEARAEKRDA LITALLNKLR  300
REDM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019054174.10.0PREDICTED: trihelix transcription factor GT-3b-like isoform X1
SwissprotO804504e-71TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A1U8Q5U90.0A0A1U8Q5U9_NELNU; trihelix transcription factor GT-3b-like isoform X1
STRINGXP_010264622.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.19e-54Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]