PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012142-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 268aa    MW: 29497.7 Da    PI: 7.8995
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012142-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.15e-18180214135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  NNU_012142-RA 180 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 214
                    *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.4E-824267IPR016679Transcription factor, GATA, plant
SMARTSM004011.1E-15174224IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.583174210IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-14178238No hitNo description
Gene3DG3DSA:3.30.50.101.1E-13178212IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.36E-13179226No hitNo description
PfamPF003207.2E-16180214IPR000679Zinc finger, GATA-type
PROSITE patternPS003440180205IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDMFGLPAPD FLHIDDLLDF SNDDLFSDSD LIHLPPSENN PGNRPSITTD NSNLSTSFPN  60
DLCVPNDDVA ELEWLSKFVD DSYTDFPTNE PVGNTKYRAD ASVPGRTRSK RSRAASTHIS  120
WTSLPESYIP VTGKSKLGNS NTNINSTSSR KKEGSLASSV ITAAEPSGSA SSSSSGVRKC  180
THCASEKTPQ WRTGPLGPKT LCNACGVRYK SGRLVPEYRP AASPTFVLAQ HSNSHRKVME  240
LRRQKEILRQ QSSNHHPLYH HHPDFKVC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105110RTRSKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264324.10.0PREDICTED: GATA transcription factor 4-like
SwissprotO497419e-74GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A1U8AA280.0A0A1U8AA28_NELNU; GATA transcription factor
STRINGXP_010264324.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.12e-61GATA transcription factor 2
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]