PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_012113-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family Trihelix
Protein Properties Length: 320aa    MW: 36078.5 Da    PI: 10.2386
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_012113-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.71.7e-1469155186
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                    +W++  + +Li+a  e+  +l+rg+lk+++W+ev++++      +++ ++ +qCk++++ l+k+yk + +   ++    s+++++fd+++
  NNU_012113-RA  69 CWSEGATSTLIDAWGERYIELNRGNLKQKHWQEVADVVtsreDYTKVPKTDIQCKNRIDTLKKKYKIELAKIASG---ISTKWSFFDRID 155
                    7*************************************86555556677889**************999988876...6789*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.7E-2567157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0010431Biological Processseed maturation
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MSMEDEEEIE SHPTSPASSD HQTGPSQPVT VAAPPPPSRQ SLTLALPIQQ PRTANTTTGG  60
GASHGREDCW SEGATSTLID AWGERYIELN RGNLKQKHWQ EVADVVTSRE DYTKVPKTDI  120
QCKNRIDTLK KKYKIELAKI ASGISTKWSF FDRIDQLIGP SSRKNEDLDN HTPSGPTPKS  180
SAAAAFRNFR SLRQPQVKQR ESTNSGDSTD GLPPATNNVN GKRWRFKKEP IRSGWGGKSE  240
SSSMKELSRA ILKFGEVYEK VEKSKLEQVM EMEKQRMELT RELELQRLRF FMKTQIELSQ  300
LKHRRRVVVG NGRRNSNNSG
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00356DAPTransfer from AT3G14180Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264262.10.0PREDICTED: trihelix transcription factor ASIL2-like
SwissprotQ9LJG82e-50ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A1U8ABR80.0A0A1U8ABR8_NELNU; trihelix transcription factor ASIL2-like
STRINGXP_010264262.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.17e-53sequence-specific DNA binding transcription factors