PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | NNU_012072-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 246aa MW: 27193.3 Da PI: 8.5024 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 127.2 | 2.2e-39 | 62 | 210 | 23 | 170 |
YABBY 23 avsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirP 118 +vsvP +slfk+vtvrCGhCt+llsvn++ a + hl++++ + ++ l+ + + + +++ s+ s + ++e+pr+p v+r NNU_012072-RA 62 MVSVPCSSLFKTVTVRCGHCTNLLSVNMRGLLLPAANQLHLGNTFFSPSHNFLEEIPSPQPNLLIDQPNPNDSIVS---VRGGSDELPRPPAVNRQ 154 69***********************999999999999999999999998877777777766666766666666665...34678899**999**99 PP YABBY 119 PekrqrvPsaynrfi....keeiqrikasnPdishreafsaaaknWahfPkihfgl 170 y+ i ++eiqrika+nPdi+hreafsaaaknWahfP+ihfgl NNU_012072-RA 155 TVESETLKQIYDLDIyiccRDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIHFGL 210 99888888888753322558**********************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 2.1E-38 | 62 | 210 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009909 | Biological Process | regulation of flower development | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010159 | Biological Process | specification of organ position | ||||
GO:0010450 | Biological Process | inflorescence meristem growth | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 246 aa Download sequence Send to blast |
NQSKPLNPII QSNQGIKDVL LLCFFTGPPL SLRAALLRPL QLLRHCPRGI KLSISSLTRG 60 TMVSVPCSSL FKTVTVRCGH CTNLLSVNMR GLLLPAANQL HLGNTFFSPS HNFLEEIPSP 120 QPNLLIDQPN PNDSIVSVRG GSDELPRPPA VNRQTVESET LKQIYDLDIY ICCRDEIQRI 180 KAGNPDITHR EAFSAAAKNW AHFPHIHFGL MPDQTVKKSN VRQQEGEEVL MKDGIFASAN 240 VGVSPY |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00620 | PBM | Transfer from AT2G45190 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010264212.1 | 1e-115 | PREDICTED: protein YABBY 4-like | ||||
Swissprot | Q01JG2 | 4e-56 | YAB5_ORYSI; Protein YABBY 5 | ||||
Swissprot | Q0JBF0 | 4e-56 | YAB5_ORYSJ; Protein YABBY 5 | ||||
TrEMBL | A0A1U8AF42 | 1e-114 | A0A1U8AF42_NELNU; protein YABBY 4-like | ||||
STRING | XP_010264212.1 | 1e-115 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45190.1 | 8e-58 | YABBY family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|