PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_011942-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | GATA | ||||||||
Protein Properties | Length: 211aa MW: 23618 Da PI: 10.0201 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.7 | 1.4e-17 | 128 | 162 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C + kTp+WR gp g+ktLCnaCG++y++ +l NNU_011942-RA 128 CLHCLAEKTPQWRAGPLGPKTLCNACGVRYKSGRL 162 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 5.23E-14 | 120 | 183 | No hit | No description |
PROSITE profile | PS50114 | 11.78 | 122 | 158 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.6E-14 | 122 | 176 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 8.6E-14 | 125 | 160 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.76E-10 | 127 | 175 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 128 | 153 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.3E-15 | 128 | 162 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MLLVPPIQEL LEEDLEWLSN EDAFPAVEAF DDFLLGKLSK GPKQQSPVSV LENSSNSAIN 60 SSSSIMSCCG NLQVPVRARS KRRRRRRSGF SDISGQQWWW WWEPKNKSIG GGGAAKVTKT 120 TASMGRRCLH CLAEKTPQWR AGPLGPKTLC NACGVRYKSG RLVPEYRPAC SPTFSSELHS 180 NSHRKILEMR RQKQKELLLK SMDKGDDGNE A |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 78 | 86 | RSKRRRRRR |
2 | 80 | 85 | KRRRRR |
3 | 80 | 86 | KRRRRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00377 | DAP | Transfer from AT3G24050 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010264014.1 | 1e-144 | PREDICTED: GATA transcription factor 1 | ||||
Swissprot | Q8LAU9 | 9e-50 | GATA1_ARATH; GATA transcription factor 1 | ||||
TrEMBL | A0A1U8AEN8 | 1e-142 | A0A1U8AEN8_NELNU; GATA transcription factor 1 | ||||
STRING | XP_010264014.1 | 1e-143 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 1e-46 | GATA transcription factor 1 |