PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_011863-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GATA
Protein Properties Length: 344aa    MW: 37411.7 Da    PI: 4.7986
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_011863-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.92.5e-17261295135
           GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                    Cs+C + kTp+WR gp g ktLCnaCG++y++ +l
  NNU_011863-RA 261 CSHCLVQKTPQWRTGPLGAKTLCNACGVRYKSGRL 295
                    *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.1E-812340IPR016679Transcription factor, GATA, plant
SMARTSM004018.2E-15255309IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.517255291IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.47E-13257318No hitNo description
Gene3DG3DSA:3.30.50.109.2E-14259293IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.94E-12260317No hitNo description
PROSITE patternPS003440261286IPR000679Zinc finger, GATA-type
PfamPF003202.8E-15261295IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MECVEARALK TSLLPEMALK SNQQVSWDDE WYVNGANGVA GDDFFVDDLF DFSNGDVGGG  60
LGLFEEVEEE EEEEEEKDCA SVSSQEQGEN DNCNSIAFSV KDDFGCVPGS ELSVPTDDLA  120
SLEWLSRFVE DSFSGFPLPC PAGNPTDKTQ GETLNRPEPE PGITPLKFPV FQTPVPCKAR  180
SKRARTGGRV WSLVSPLLRE SSSSSSSSSS SSSSSSSTSC LMLTNSGQNL ELFDHSLKPP  240
AKKQKKKPVT ETGGPQPPRR CSHCLVQKTP QWRTGPLGAK TLCNACGVRY KSGRLLPEYR  300
PACSPTFSSD VHSNNHRKVL EMRRKKEMMI GGPESGLAPA VQSF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263870.10.0PREDICTED: GATA transcription factor 5-like
SwissprotQ9FH579e-77GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A1U8A9110.0A0A1U8A911_NELNU; GATA transcription factor
STRINGXP_010263870.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51080.13e-52GATA transcription factor 6