PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NNU_011811-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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Family | B3 | ||||||||
Protein Properties | Length: 145aa MW: 16758.4 Da PI: 10.7261 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.7 | 3.3e-16 | 16 | 106 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ffkvl++ +++ l++p +f+++++g+ sk +l+ ++g+ vk+++ kk+ ++ +GW +Fvk + L g+f+vF+++g+s+f vkv NNU_011811-RA 16 FFKVLLRREDFRL--LRIPPSFIKHFNGS--VSKASILRGPTGKPLHVKVKWVKKQ--LFFCNGWGRFVKHHSLALGEFLVFRYHGNSKF--SVKV 103 8899977777776..9*******877555..3567899************765554..77889***********************9999..8888 PP E-S CS B3 97 frk 99 +++ NNU_011811-RA 104 YDA 106 876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-21 | 10 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.84E-22 | 11 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.28E-15 | 14 | 105 | No hit | No description |
SMART | SM01019 | 1.4E-6 | 16 | 107 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-13 | 16 | 106 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.293 | 29 | 107 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MDCTVANSCR RNRPSFFKVL LRREDFRLLR IPPSFIKHFN GSVSKASILR GPTGKPLHVK 60 VKWVKKQLFF CNGWGRFVKH HSLALGEFLV FRYHGNSKFS VKVYDASACE KEVPSLEVGT 120 QGQSHPYQDQ ENQIRLIARD IKKEP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010263945.1 | 1e-103 | PREDICTED: B3 domain-containing protein Os01g0723500-like | ||||
TrEMBL | A0A1U8AB15 | 1e-102 | A0A1U8AB15_NELNU; B3 domain-containing protein Os01g0723500-like | ||||
STRING | XP_010263945.1 | 1e-103 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01580.1 | 3e-19 | B3 family protein |